SNP Profiles of RB 37 [BRA]   View Data

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 Key

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_Input profile
CCAACCCTCCAATTGGTTAAGGCTAACC
1._RB_37_[BRA]
_AACCCCCCAATTGGTTAAGGCTAACC
2._RUQ_1705
__CC____GG__GG_AA_
3._RUQ_135
CCAGCCCCCCAATTGGCTAAGGCTAACC
4._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
5._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
6._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
7._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
8._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
9._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
10._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
11._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
12._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
13._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
14._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
15._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
16._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
17._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
18._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
19._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
20._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
21._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
22._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
23._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
24._RB_37_[BRA]
CCAACCCCCTAATTGGCTAAGGCCAACC
25._GC-01-043-2-20
CCAACCCCCTAATTGGCTAAGGCCAACC
26._GC-01-43-2-20
GGAAGGGGAGAAAACC_AAGGGGAAGG
27._GC-01-43-2-20
GGAAGGGGAG_AACC_AAGGGGAAGG
 1516171819202122232425262728
_Input profile
AACGCTTTGGGGAACCCCGGGGCCACAA
1._RB_37_[BRA]
AACGCTTTGGGGAACCCCGG_CCAC_
2._RUQ_1705
____GGGGAA_CCGG__AA_
3._RUQ_135
AACGCTCTGGGGAACCCCGGGGCCACAA
4._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
5._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
6._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
7._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
8._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
9._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
10._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
11._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
12._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
13._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
14._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
15._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
16._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
17._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
18._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
19._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
20._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
21._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
22._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
23._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
24._RB_37_[BRA]
AAGGTTTTGGGGAACCACGGGGCCCCAG
25._GC-01-043-2-20
AAGGTTTTGGGGAACCACGGGGCCCCAG
26._GC-01-43-2-20
AAGGAAAACCCC_GGACCGCC_CC_
27._GC-01-43-2-20
AAGGAAAACCCC_GGACCGCC_CC_
 2930313233343536      
_Input profile
AACTAACCGGACAAGGX_XX_XX_XX_XX_XX_X
1._RB_37_[BRA]
AACTAACCGGACAAGGX_XX_XX_XX_XX_XX_X
2._RUQ_1705
__AA__AC__X_XX_XX_XX_XX_XX_X
3._RUQ_135
AACTAACCGGACAAGGX_XX_XX_XX_XX_XX_X
4._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
12._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
13._GC-01-043-2-20
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
14._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
15._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
16._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
17._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
18._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
19._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
20._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
21._RB_37_[BRA]
AATTAACCGGCCAAGGX_XX_XX_XX_XX_XX_X
22._GC-01-043-2-20
AACCAA_GGCCAAGGX_XX_XX_XX_XX_XX_X
23._RB_37_[BRA]
AACCAA_GGCCAAGGX_XX_XX_XX_XX_XX_X
24._RB_37_[BRA]
AATTAA_GGCCAAGGX_XX_XX_XX_XX_XX_X
25._GC-01-043-2-20
AATTAA_GGCCAAGGX_XX_XX_XX_XX_XX_X
26._GC-01-43-2-20
AAAAAACCCCCCAAGGX_XX_XX_XX_XX_XX_X
27._GC-01-43-2-20
AAAAAACCCCCCAAGGX_XX_XX_XX_XX_XX_X

Input profile: RB_37_[BRA]

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._RB_37_[BRA]

98.5 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._RB_37_[BRA] RUQ_1705

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._RB_37_[BRA] RUQ_135

94.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

5._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._RB_37_[BRA] GC-01-043-2-20

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

14._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

15._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

16._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

17._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

18._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

19._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

20._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

21._RB_37_[BRA]

84.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

22._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

24._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

25._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

26._RB_37_[BRA] GC-01-43-2-20

42.2 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

40.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP193 33TcSNP150 34TcSNP144 35TcSNP32
36TcSNP25